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A meta-analysis including pre-selected sequence variants associated with seven traits in three French dairy cattle populations

Andrew G. Marete , Bernt Guldbrandtsen , Mogens S. Lund , Sebastien Fritz , Goutam Sahana , et al.
Frontiers in Genetics, 2018, 9, pp.522. ⟨10.3389/fgene.2018.00522⟩
Journal articles hal-02625793v1
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Metabolomic analysis revealed differences between bovine cloned embryos with contrasting development abilities

Denis Laloë , Daniel Le Bourhis , Vincent Brochard , A. Fernandez-Gonzales , Delphine Dube , et al.
31. Colloque Scientifique de l'AETE, Association Européenne de Transfert Embryonnaire - European Embryo Transfer Association (AETE). FRA., Sep 2015, Ghent, Belgium
Conference papers hal-01536465v1
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Génosanté: improve the productive health of dairy cows by genomic selection and management

Helene Leclerc , Anne Barbat , M. Philippe , Sebastien Fritz , J.B. Daviere , et al.
67. Annual meeting of the European Federation of Animal Science (EAAP 2016), Aug 2016, Belfast, United Kingdom
Conference papers hal-02739795v1

Small non coding RNA from frozen bull sperm cells: biomarkers of male fertility?

Eli Sellem , Sylvain Marthey , Hélène Kiefer , Chrystelle Le Danvic , Aurélie Allais-Bonnet , et al.
36. Conference of the International Society for Animal Genetics (ISAG), Jul 2017, Dublin, Ireland. , pp.222, 2017, ISAG 2017 36th International Society for Animal Genetics Conference
Conference poster hal-02735698v1
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GWAS of resistance to paratuberculosis in French Holstein and Normande cattle breeds

Marie-Pierre Sanchez , Raphaël R. Guatteo , A. Davergne , Cécile Grohs , Aurelien Capitan , et al.
67. Annual meeting of the European Federation of Animal Science (EAAP 2016), Aug 2016, Belfast, United Kingdom. 684 p
Conference papers hal-02742788v1

Using sequences data to identify causal variants for milk fatty acids composition in dairy cattle

Armelle Gion , Marie-Pierre Sanchez , Pascal Croiseau , Anne Barbat , S. Fritz , et al.
66. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2015, Varsovie, Poland. 577 p
Conference papers hal-01536474v1

Alternative haplotype construction methods for genomic evaluation

David Jonas , Vincent Ducrocq , Marie-Noelle Fouilloux , Pascal Croiseau
Journal of Dairy Science, 2016, 99 (6), pp.4537-4546. ⟨10.3168/jds.2015-10433⟩
Journal articles hal-01533890v1

Bull spermatozoa methylation landscape displays breed-specific features revealed by RRBS analysis

Jean-Philippe Perrier , François Piumi , Luc Jouneau , Maxime Gasselin , Eli Sellem , et al.
Livestock Genomics Meeting 2016, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI). GBR., Sep 2016, Cambridge, United Kingdom. 45 Diapositives
Conference papers hal-02797604v1

Identification and characterization of copy number variations in cattle

Rabia Letaief , Diane Esquerre , Johanna Barbieri , Cécile Grohs , Sebastien Fritz , et al.
Journal of Animal Science, 2016, 94, pp.183-183. ⟨10.2527/jas2016.94supplement4183a⟩
Journal articles hal-01605684v1
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Les anomalies génétiques chez les espèces d’élevage - Avant-propos

Didier Boichard , Aurélien Capitan , Coralie Danchin-Burge , Cécile Grohs
INRAE Productions Animales, 2016, 29 (5), pp.293-296. ⟨10.20870/productions-animales.2016.29.5.2995⟩
Journal articles hal-04045143v1
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Coding and noncoding variants in HFM1, MLH3, MSH4, MSH5, RNF212, and RNF212B affect recombination rate in cattle

Naveen Kumar Kadri , Chad Harland , Pierre Faux , Nadine Cambisano , Latifa Karim , et al.
Genome Research, 2016, 26 (10), pp.1323-1332. ⟨10.1101/gr.204214.116⟩
Journal articles hal-02637972v1
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French genomic experience: genomics for all ruminant species

Eric VENOT , Didier Boichard , Vincent Ducrocq , Pascal Croiseau , S. Fritz , et al.
40. Biennal session of ICAR, Oct 2016, Puerto Varas, Chile
Conference papers hal-01606324v1
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Accuracy of prediction for a genomic evaluation in rotational crossbreeding scheme (Montbéliarde x Holstein x Red Danish)

R Saintilan , P Croiseau , A Baur , I Croue , V Ducrocq , et al.
ICAR/Interbull Annual Conference, May 2022, Montréal, Canada
Conference papers hal-03744840v1
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Weighted single-step genomic best linear unbiased prediction integrating variants selected from sequencing data by association and bioinformatics analyses

Aoxing Liu , Mogens Sandø Lund , Didier Boichard , Emre Karaman , Bernt Guldbrandtsen , et al.
Genetics Selection Evolution, 2020, 52 (1), pp.48. ⟨10.1186/s12711-020-00568-0⟩
Journal articles hal-02969616v1

A missense mutation in PFAS (phosphoribosylformylglycinamidine synthase) is likely causal for embryonic lethality associated with the MH1 haplotype in Montbéliarde dairy cattle

Pauline Michot , Sebastien Fritz , Anne Barbat , Mekki Boussaha , Marie-Christine Deloche , et al.
Journal of Dairy Science, 2017, 100 (10), pp.8176-8187. ⟨10.3168/jds.2017-12579⟩
Journal articles hal-02619062v1
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imputation for sequencing variants preselected to a customized low-density chip

Aoxing Liu , Mogens Sandø Lund , Didier Boichard , Xiaowei Mao , Emre Karaman , et al.
Scientific Reports, 2020, 10 (1), pp.9524. ⟨10.1038/s41598-020-66523-7⟩
Journal articles hal-02969666v1

272. Accuracy of prediction for a genomic evaluation in rotational crossbreeding scheme (Montbéliarde × Holstein × Red Danish)

P. Croiseau , R. Saintilan , A. Baur , I. Croue , V. Ducrocq , et al.
World Congress on Genetics Applied to Livestock Production, Jul 2022, Rotterdam, Netherlands. pp.1148-1151, ⟨10.3920/978-90-8686-940-4_272⟩
Conference papers hal-04127788v1

Genetic features of strains of Mycobacterium avium subsp. paratuberculosis circulating in the West of France deciphered by Whole-Genome Sequencing

Cyril Condé , Thierry Cochard , Maxime Branger , Marie-Noëlle Rossignol , Christine Fourichon , et al.
16. Congrès national de la SFM - Microbes 2021, Sep 2021, Nantes, France. , OM-P04
Conference poster hal-03473049v1

Intensified Use of Reproductive Technologies and Reduced Dimensions of Breeding Schemes Put Genetic Diversity at Risk in Dairy Cattle Breeds

Anna-Charlotte Doublet , Gwendal Restoux , Sébastien Fritz , Laura Balberini , Guillaume Fayolle , et al.
Animals, 2020, 10 (10), pp.1903. ⟨10.3390/ani10101903⟩
Journal articles hal-02975056v1

Genome-wide association study for milking speed in French Holstein cows.

Andrew Marete , Goutam Sahana , Sebastien Fritz , Rachel Lefebvre , Anne Barbat , et al.
Journal of Dairy Science, 2018, 101 (7), pp.6205-6219. ⟨10.3168/jds.2017-14067⟩
Journal articles hal-02623282v1

Sequence-based association study of resistance to paratuberculosis in Holstein and Normande cattle

Marie-Pierre Sanchez , Raphaël R. Guatteo , A. Davergne , Cécile Grohs , Sébastien Taussat , et al.
69. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2018, Dubrovnik, Croatia
Conference papers hal-02736321v1

Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals

Aniek C. Bouwman , Hans D. Daetwyler , Amanda J. Chamberlain , Carla Hurtado Ponce , Mehdi Sargolzaei , et al.
Nature Genetics, 2018, 50 (3), pp.362-367. ⟨10.1038/s41588-018-0056-5⟩
Journal articles hal-02628780v1

Frequencies of milk protein variants and haplotypes estimated from genotypes of more than 1 million bulls and cows of 12 French cattle breeds

Marie-Pierre Sanchez , S. Fritz , C. Patry , A. Delacroix-Buchet , D. Boichard
Journal of Dairy Science, 2020, 103 (10), pp.9124-9141. ⟨10.3168/jds.2020-18492⟩
Journal articles hal-02969677v1
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Prediction of gametic variance and its use in breeding programs

Chris Hozé , Aurelia A. Baur , Sébastien Fritz , Didier Boichard
71st Annual Meeting of the European Association of Animal Production, Dec 2020, Virtual, France
Conference papers hal-03037084v1

Small non coding RNA from Frozen bull sperm cells

Eli Sellem , Sylvain S. Marthey , Hélène Kiefer , Chrystelle Le Danvic , Aurélie Allais-Bonnet , et al.
18. International Congress on Animal Reproduction (ICAR), International Organisation on Animal Reproduction. FRA., Jun 2016, Tours, France. 676 p
Conference papers hal-02743053v1

Overview of beef cattle national genomic evaluation in France

Romain Saintilan , Thierry Tribout , Marine Barbat , Marie-Noelle Fouilloux , Eric VENOT , et al.
66. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2015, Varsovie, Poland. 577 p
Conference papers hal-01536479v1

Methylation levels at the GNAS locus is not associated with field fertility in Holstein bulls

Eli Sellem , Jean-Philippe Perrier , Hélène Kiefer , Audrey Prézelin , Hervé Acloque , et al.
Epiconcept Workshop 2015 Periconception Environnement, Apr 2015, Dubrovnik, Croatia. COST Edition, 60 p., 2015, Epigenetics and Periconception Environment
Conference poster hal-01194109v1

The combined use of linkage disequilibrium-based haploblocks and allele frequency-based haplotype selection methods enhances genomic evaluation accuracy in dairy cattle

David Jonas , Vincent Ducrocq , Pascal Croiseau
Journal of Dairy Science, 2017, 100 (4), pp.2905-2908. ⟨10.3168/jds.2016-11798⟩
Journal articles hal-01605119v1

Haplotype construction methods to enhance genomic evaluation

David Jonas , Vincent Ducrocq , Pascal Croiseau
66. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2015, Varsovie, Poland. 577 p
Conference papers hal-01535255v1

Detailed analysis of mortality rates in the female progeny of Holstein bulls allows the discovery of new dominant genetic defects

Florian Besnard , Hélène Leclerc , Nora Cesbron , Mekki Boussaha , Cécile Grohs , et al.
World Congress on Genetics Applied to livestock Production (WCGALP), Jul 2022, Rotterdam, Netherlands
Conference papers hal-03666500v1