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Watch out for a second SNP: focus on multi-nucleotide variants in coding regions and rescued stop-gained
Fabien Degalez
,
Frédéric Jehl
,
Kévin Muret
,
Maria Bernard
,
Frédéric Lecerf
,
et al.
Journal articles
hal-03280040v1
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FROGS: a powerful tool to analyse the diversity of fungi with special management of internal transcribed spacers
Maria Bernard
,
Olivier Rué
,
Mahendra Mariadassou
,
Géraldine Pascal
Journal articles
hal-03323846v1
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RNA-Seq Data for Reliable SNP Detection and Genotype Calling
Frédéric Jehl
,
Fabien Degalez
,
Frédéric Lecerf
,
Maria Bernard
,
Laetitia Lagoutte
,
et al.
Journal articles
hal-03276149v1
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A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses
Ali Hakimzadeh
,
Alejandro Abdala Asbun
,
Davide Albanese
,
Maria Bernard
,
Dominik Buchner
,
et al.
Journal articles
hal-04183770v1
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Gene Banks as Reservoirs to Detect Recent Selection: The Example of the Asturiana de los Valles Bovine Breed
Simon Boitard
,
Cyriel Paris
,
Natalia Sevane
,
Bertrand Servin
,
Kenza Bazi-Kabbaj
,
et al.
Journal articles
hal-03357162v1
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FROGSFUNC: Smart integration of PICRUSt2 software into FROGS pipeline
Vincent Darbot
,
Moussa Samb
,
Maria Bernard
,
Olivier Rué
,
Géraldine Pascal
JOBIM 2022, Jul 2022, Rennes, France.
Conference poster
hal-03806133v1
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Identification and characterisation of mitochondrial sequences integrated into the ovine nuclear genome
M. Féménia
,
M. Charles
,
A. Boulling
,
D. Rocha
Journal articles
hal-03357099v1
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Detection of selection signatures in Limousin cattle using whole‐genome resequencing
M. Mariadassou
,
Y. Ramayo‐caldas
,
M. Charles
,
M. Féménia
,
G. Renand
,
et al.
Journal articles
hal-03285327v1
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Identification and characterisation of mitochondrial sequences integrated into the ovine nuclear genome
M. Féménia
,
M. Charles
,
A. Boulling
,
D. Rocha
Journal articles
hal-04102542v1
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GENESEA : développement de la sélection génomique chez le bar et la daurade
François Allal
,
Ronan Griot
,
Pierre-Alexandre Gagnaire
,
Christophe C. Klopp
,
Aline Bajek
,
et al.
Journées Techniques du Sysaaf, Dec 2017, Rennes, France
Conference papers
hal-03156734v1
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Survey of mitochondrial sequences integrated into the bovine nuclear genome
Erwin Tramontin Grau
,
Mathieu Charles
,
Maureen Féménia
,
Emmanuelle Rebours
,
Anne Vaiman
,
et al.
Journal articles
hal-03238137v1
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A richer gut microbiota is related to better feed efficiency and diet adaptability in laying hens
Maria Bernard
,
Alexandre Lecoeur
,
Jean-Luc Coville
,
Nicolas Bruneau
,
Deborah Jardet
,
et al.
74. Annual meeting of the european federation of animal science (EAAP), EAAP, Aug 2023, Lyon, France. pp.740
Conference papers
hal-04199104v1
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Whole genome sequencing reveals signals of adaptive admixture in Creole cattle
Slim Ben-Jemaa
,
Gabriele Adam
,
Mekki Boussaha
,
Philippe Bardou
,
Christophe C. Klopp
,
et al.
Journal articles
hal-04186791v1
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Genetic determinism of spontaneous masculinisation in XX female rainbow trout: new insights using medium throughput genotyping and whole-genome sequencing
Clémence Fraslin
,
Florence Phocas
,
Anastasia Bestin
,
Mathieu Charles
,
Maria Bernard
,
et al.
2020
Preprints, Working Papers, ...
hal-03026383v1
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A NEW 665K SNP ARRAY USED FOR DETECTING SIGNATURES OF POSITIVE SELECTION IN RAINBOW TROUT (ONCORHYNCHUS MYKISS)
Florence Phocas
,
Katy Paul
,
Audrey Dehaullon
,
Maria Bernard
,
Gwendal Restoux
,
et al.
International Symposium on Genetics in Aquaculture, Nov 2022, Puerto Varas, Chile
Conference papers
hal-03778981v1
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Whole-genome sequencing reveals insights into the adaptation of French Charolais cattle to Cuban tropical conditions
Lino C. Ramírez-Ayala
,
Dominique Rocha
,
Sebas E. Ramos-Onsins
,
Jordi Leno-Colorado
,
Mathieu Charles
,
et al.
Journal articles
hal-03105253v1
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Genetic determinism of spontaneous masculinisation in XX female rainbow trout: new insights using medium throughput genotyping and whole-genome sequencing
Clémence Fraslin
,
Florence Phocas
,
Anastasia Bestin
,
Mathieu Charles
,
Maria Bernard
,
et al.
Journal articles
hal-02988446v1
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An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues
Frédéric Jehl
,
Kévin Muret
,
Maria Bernard
,
Morgane Boutin
,
Laetitia Lagoutte
,
et al.
Journal articles
hal-03039897v1
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Le projet « Mille Génomes Gallus » : partager les données de séquences pour mieux les utiliser
Michèle Tixier-Boichard
,
Frédéric Lecerf
,
Frédéric Herault
,
Philippe Bardou
,
Christophe C. Klopp
Journal articles
hal-03103324v1
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Insights on the particle-attached riverine archaeal community shifts linked to seasons and to multipollution during a Mediterranean extreme storm event
Mégane Noyer
,
Maria Bernard
,
Olivier Verneau
,
Carmen Palacios
Journal articles
hal-04028116v1
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The rise and fall of the ancient northern pike master sex-determining gene
Qiaowei Pan
,
Romain Feron
,
Elodie Jouanno
,
Hugo Darras
,
Amaury Herpin
,
et al.
Journal articles
hal-03139073v2
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The richer the better: 16S metabarcoding analysis of gut microbiota of laying hens in relation to feed efficiency and adaptation to diet change
Maria Bernard
,
Alexandre Lecoeur
,
Jean-Luc Coville
,
Nicolas Bruneau
,
Deborah Jardet
,
et al.
13. International Gut Microbiology Symposium 2023, Jun 2023, Aberdeen, United Kingdom. , 2023, Programme and book of abstracts
Conference poster
hal-04127869v1
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Sources of variation of DNA methylation in rainbow trout: combined effects of temperature and genetic background
Delphine Lallias
,
Maria Bernard
,
Céline Ciobotaru
,
Nicolas Dechamp
,
Laurent Labbé
,
et al.
Journal articles
hal-03003559v1
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RNA-SEQ data for reliable SNP detection and genotype calling in livestock species: interest for coding variant characterization and cis-regulation analysis by allele-specific expression
Frédéric Jehl
,
Fabien Degalez
,
Maria Bernard
,
Frédéric Lecerf
,
Laetitia Lagoutte
,
et al.
26. World's Poultry Congress (WPC), Aug 2022, Paris, France. pp.405
Conference papers
hal-04132375v1
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