An atlas of chicken long non-coding RNAs gathering multiple sources : gene models and expression across more than twenty tissues
Frédéric Jehl
,
Kévin Muret
,
Maria Bernard
,
Diane Esquerré
,
Hervé Acloque
,
et al.
PAG XXVII - Plant & Animal Genome Conference , Jan 2019, San Diego, United States
Conference papers
hal-02790912v1
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FROGS Training on Galaxy : Metagenomics November 2017
Frédéric Escudié
,
Lucas Auer
,
Maria Bernard
,
Laurent Cauquil
,
Sarah Maman
,
et al.
Formation Métagénomique avec le logiciel FROGS (Find, Rapidly, Otus with Galaxy Solution), 2017, 270 p
Lectures
hal-02791696v1
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Watch out for a second SNP: focus on multi-nucleotide variants in coding regions and rescued stop-gained
Fabien Degalez
,
Frédéric Jehl
,
Kévin Muret
,
Maria Bernard
,
Frédéric Lecerf
,
et al.
Journal articles
hal-03280040v1
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Find Rapidly OTU with Galaxy Solution
Frédéric Escudie
,
Lucas Auer
,
Maria Bernard
,
Laurent Cauquil
,
Katia Vidal
,
et al.
JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques , Jul 2015, Clermont-Ferrand, France
Conference papers
hal-01535378v1
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RAD-seq mapping of spontaneous masculinization in XX doubled haploid rainbow trout lines
René Guyomard
,
Yann Guiguen
,
Maria Bernard
,
Aurélie Charlet
,
Nicolas Dechamp
,
et al.
10. World Congress on Genetics Applied to Livestock Production (WCGALP) , Aug 2014, Vancouver, Canada
Conference papers
hal-01194148v1
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Insights into vertebrate whole-genome duplications from the rainbow trout genome
Camille Berthelot
,
Frédéric Brunet
,
Domitille Chalopin
,
Amélie Juanchich
,
Maria Bernard
,
et al.
22. Annual Meeting of the Society for Molecular Biology and Evolution (SMBE) , Jun 2014, Puerto Rico, Puerto Rico. 2014, Smbe 2014. Molecular Evolution: From Genome Technology to the History of Life
Conference poster
hal-01194063v1
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Correction to: Quantitative trait loci for resistance to Flavobacterium psychrophilum in rainbow trout: effect of the mode of infection and evidence of epistatic interactions
Clémence Fraslin
,
Nicolas Dechamp
,
Maria Bernard
,
Francine Krieg
,
Caroline Hervet
,
et al.
Journal articles
hal-02618168v1
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Functional inference integrated in the FROGS suite
Moussa Samb
,
Maria Bernard
,
Géraldine Pascal
Conference poster
hal-03176828v1
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Pedigree‐free quantitative genetic approach provides evidence for heritability of movement tactics in wild roe deer
Laura Gervais
,
A.J. Mark Hewison
,
Nicolas Morellet
,
Maria Bernard
,
Joel Merlet
,
et al.
Journal articles
hal-02622271v1
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In-depth genomic characterization of a unique collection of rainbow trout isogenic lines
Delphine Lallias
,
Mekki Boussaha
,
Maria Bernard
,
Antoine Peigné
,
Céline Ciobotaru
,
et al.
Aquaculture Europe 2019 , Oct 2019, Berlin, Germany
Conference poster
hal-02950600v1
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Utilisation de la métagénomique 16S pour la surveillance de l’émergence de zoonoses bactériennes dans les populations animales
Maxime Galan
,
Maria Razzauti Sanfeliu
,
Khalilou Bâ
,
Emilie Bard
,
Maria Bernard
,
et al.
Troisième Colloque de Génomique Environnementale , Oct 2015, Montpellier, France
Conference papers
hal-02800485v1
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Cartographie par rad-sequencing de QTL à l'origine de neomales spontanés chez la truite arc-en-ciel
René R. Guyomard
,
Maria Bernard
,
Nicolas Dechamp
,
Aurélie A. Charlet
,
C. Hervet
,
et al.
5. Journées de la Recherche Filière Piscicole , Jul 2016, Paris, France.
, Journées de la Recherche Filière Piscicole, pp.49, 2016, JRFP 2016
Conference poster
hal-02742156v1
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Detection of Orientia sp. DNA in rodents from Asia, West Africa and Europe
Jean François Cosson
,
Maxime Galan
,
Emilie Bard
,
Maria Razzauti
,
Maria Bernard
,
et al.
Journal articles
hal-01217533v1
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Resistance to Flavobacterium psychrophilum in rainbow trout : QTL detection reveals effect of infection route and epistatic interactions
Clémence Fraslin
,
Christos Palaiokostas
,
Nicolas Dechamp
,
Maria Bernard
,
Tatiana Rochat
,
et al.
13. International Symposium of Genetics in Aquaculture (ISGA XIII) , Jul 2018, Cairns, Australia
Conference papers
hal-02734535v1
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Microbial metacommunity: a METABAR coding approach
Marc Buee
,
Matthieu Barret
,
Maria Bernard
,
Didier Debroas
,
Isabelle Domaizon
,
et al.
2017 Scientific MEM days: Journées scientifiques MEM (Métaomiques et écosystèmes microbiens) , Jan 2017, Paris, France
Conference papers
hal-01607836v1
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FROGS: Find, Rapidly, OTUs with Galaxy Solution
Frédéric Escudié
,
Lucas Auer
,
Maria Bernard
,
Mahendra Mariadassou
,
Laurent Cauquil
,
et al.
Journal articles
hal-02626808v1
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FROGS : Find Rapidly OTUs with Galaxy Solution
Frédéric Escudie
,
Lucas Auer
,
Maria Bernard
,
Laurent Cauquil
,
Katia Vidal
,
et al.
Colloque d'Écologie Microbienne organisé par l'Association Française d'Écologie Microbienne (AFEM) , Nov 2015, Anglet, France. Oxford University Press, 34, 7 p., 2015, Bioinformatics
Conference poster
hal-01886389v1
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FROGS : Find Rapidly OTU with Galaxy Solution
Frédéric Escudie
,
Lucas Auer
,
Maria Bernard
,
Mahendra Mariadassou
,
Laurent Cauquil
,
et al.
2017
Other publications
hal-01886442v1
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FROGS: a powerful tool to analyse the diversity of fungi with special management of internal transcribed spacers
Maria Bernard
,
Olivier Rué
,
Mahendra Mariadassou
,
Géraldine Pascal
Journal articles
hal-03323846v1
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Analysis of genomewide patterns of DNA methylation in response to an early temperature stress in rainbow trout
Delphine Lallias
,
Edwige Quillet
,
Maria Bernard
,
Céline Ciobotaru
,
Nicolas Dechamp
,
et al.
Aquaculture Europe 2019 , Oct 2019, Berlin, Germany
Conference papers
hal-02950585v1
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RNA-Seq Data for Reliable SNP Detection and Genotype Calling
Frédéric Jehl
,
Fabien Degalez
,
Frédéric Lecerf
,
Maria Bernard
,
Laetitia Lagoutte
,
et al.
Journal articles
hal-03276149v1
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A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses
Ali Hakimzadeh
,
Alejandro Abdala Asbun
,
Davide Albanese
,
Maria Bernard
,
Dominik Buchner
,
et al.
Journal articles
hal-04183770v1
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Analysis of genetic variability of DNA methylation in response to an early temperature stress in rainbow trout
Delphine Lallias
,
Edwige Quillet
,
Maria Bernard
,
Nicolas Dechamp
,
Jean-Michel Le Calvez
,
et al.
13. International Symposium of Genetics in Aquaculture (ISGA XIII) , Jul 2018, Cairns, Australia
Conference papers
hal-02737362v1
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FROGSFUNC: Smart integration of PICRUSt2 software into FROGS pipeline
Vincent Darbot
,
Moussa Samb
,
Maria Bernard
,
Olivier Rué
,
Géraldine Pascal
JOBIM 2022 , Jul 2022, Rennes, France.
Conference poster
hal-03806133v1
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Links between fecal microbiota and the response to vaccination against influenza A virus in pigs
Marion Borey
,
Fany Blanc
,
Gaëtan Lemonnier
,
Jean-Jacques Leplat
,
Deborah Jardet
,
et al.
Journal articles
hal-03518946v1
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Des solutions informatiques innovantes pour l’utilisation et le développement de biomarqueurs de diversité du microbiote.
Maria Bernard
,
Olivier Rué
,
Malo Le Boulch
,
Jean Mainguy
,
Laurent Cauquil
,
et al.
DefisPHASE 2019 , 2019, Rennes, France
Conference poster
hal-03851900v1
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Quantitative trait loci for resistance to Flavobacterium psychrophilum in rainbow trout: effect of the mode of infection and evidence of epistatic interactions
Clémence Fraslin
,
Nicolas Dechamp
,
Maria Bernard
,
Francine Krieg
,
Caroline Hervet
,
et al.
Journal articles
hal-02405285v1
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PERFORM PROTOCOL TESTS AND SEQUENCE CHECKS ? THE EXPERIENCE FROM MULTIOMICS MICROBIOTA DATA
Maria Bernard
,
Jean-Luc Coville
,
Nicolas Bruneau
,
Deborah Jardet
,
Fanny Calenge
,
et al.
25ème Séminaire des Doctorants du Département de Génétique Animale (SDDGA 2022) , Sep 2022, Bordeaux, France.
Conference poster
hal-03930031v1
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Particle-attached riverine bacteriome shifts in a pollutant-resistant and pathogenic community during a Mediterranean extreme storm event
Mégane Noyer
,
Brice Reoyo-Prats
,
Laurence Voutquenne-Nazabadioko
,
Maria Bernard
,
Olivier Verneau
,
et al.
Journal articles
hal-03162047v1
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A richer gut microbiota is related to better feed efficiency and diet adaptability in laying hens
Maria Bernard
,
Alexandre Lecoeur
,
Jean-Luc Coville
,
Nicolas Bruneau
,
Deborah Jardet
,
et al.
74. Annual meeting of the european federation of animal science (EAAP) , EAAP, Aug 2023, Lyon, France. pp.740
Conference papers
hal-04199104v1
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