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authIdHal_s : maria-bernard
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An atlas of chicken long non-coding RNAs gathering multiple sources : gene models and expression across more than twenty tissues

Frédéric Jehl , Kévin Muret , Maria Bernard , Diane Esquerré , Hervé Acloque , et al.
PAG XXVII - Plant & Animal Genome Conference, Jan 2019, San Diego, United States
Conference papers hal-02790912v1
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FROGS Training on Galaxy : Metagenomics November 2017

Frédéric Escudié , Lucas Auer , Maria Bernard , Laurent Cauquil , Sarah Maman , et al.
Formation Métagénomique avec le logiciel FROGS (Find, Rapidly, Otus with Galaxy Solution), 2017, 270 p
Lectures hal-02791696v1
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Watch out for a second SNP: focus on multi-nucleotide variants in coding regions and rescued stop-gained

Fabien Degalez , Frédéric Jehl , Kévin Muret , Maria Bernard , Frédéric Lecerf , et al.
Frontiers in Genetics, 2021, 12, pp.659287. ⟨10.3389/fgene.2021.659287⟩
Journal articles hal-03280040v1

Find Rapidly OTU with Galaxy Solution

Frédéric Escudie , Lucas Auer , Maria Bernard , Laurent Cauquil , Katia Vidal , et al.
JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France
Conference papers hal-01535378v1
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RAD-seq mapping of spontaneous masculinization in XX doubled haploid rainbow trout lines

René Guyomard , Yann Guiguen , Maria Bernard , Aurélie Charlet , Nicolas Dechamp , et al.
10. World Congress on Genetics Applied to Livestock Production (WCGALP), Aug 2014, Vancouver, Canada
Conference papers hal-01194148v1
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Insights into vertebrate whole-genome duplications from the rainbow trout genome

Camille Berthelot , Frédéric Brunet , Domitille Chalopin , Amélie Juanchich , Maria Bernard , et al.
22. Annual Meeting of the Society for Molecular Biology and Evolution (SMBE), Jun 2014, Puerto Rico, Puerto Rico. 2014, Smbe 2014. Molecular Evolution: From Genome Technology to the History of Life
Conference poster hal-01194063v1
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Correction to: Quantitative trait loci for resistance to Flavobacterium psychrophilum in rainbow trout: effect of the mode of infection and evidence of epistatic interactions

Clémence Fraslin , Nicolas Dechamp , Maria Bernard , Francine Krieg , Caroline Hervet , et al.
Food Policy, 2019, 51, Non paginé. ⟨10.1186/s12711-019-0451-0⟩
Journal articles hal-02618168v1
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Functional inference integrated in the FROGS suite

Moussa Samb , Maria Bernard , Géraldine Pascal
JOBIM2020, Jun 2020, Montpellier, France. , ⟨10.1038/s41587-⟩
Conference poster hal-03176828v1
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Pedigree‐free quantitative genetic approach provides evidence for heritability of movement tactics in wild roe deer

Laura Gervais , A.J. Mark Hewison , Nicolas Morellet , Maria Bernard , Joel Merlet , et al.
Journal of Evolutionary Biology, 2020, ⟨10.1111/jeb.13594⟩
Journal articles hal-02622271v1
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In-depth genomic characterization of a unique collection of rainbow trout isogenic lines

Delphine Lallias , Mekki Boussaha , Maria Bernard , Antoine Peigné , Céline Ciobotaru , et al.
Aquaculture Europe 2019, Oct 2019, Berlin, Germany
Conference poster hal-02950600v1

Utilisation de la métagénomique 16S pour la surveillance de l’émergence de zoonoses bactériennes dans les populations animales

Maxime Galan , Maria Razzauti Sanfeliu , Khalilou Bâ , Emilie Bard , Maria Bernard , et al.
Troisième Colloque de Génomique Environnementale, Oct 2015, Montpellier, France
Conference papers hal-02800485v1

Cartographie par rad-sequencing de QTL à l'origine de neomales spontanés chez la truite arc-en-ciel

René R. Guyomard , Maria Bernard , Nicolas Dechamp , Aurélie A. Charlet , C. Hervet , et al.
5. Journées de la Recherche Filière Piscicole, Jul 2016, Paris, France. , Journées de la Recherche Filière Piscicole, pp.49, 2016, JRFP 2016
Conference poster hal-02742156v1
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Detection of Orientia sp. DNA in rodents from Asia, West Africa and Europe

Jean François Cosson , Maxime Galan , Emilie Bard , Maria Razzauti , Maria Bernard , et al.
Parasites & Vectors, 2015, 8 (172), pp.172. ⟨10.1186/s13071-015-0784-7⟩
Journal articles hal-01217533v1
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Resistance to Flavobacterium psychrophilum in rainbow trout : QTL detection reveals effect of infection route and epistatic interactions

Clémence Fraslin , Christos Palaiokostas , Nicolas Dechamp , Maria Bernard , Tatiana Rochat , et al.
13. International Symposium of Genetics in Aquaculture (ISGA XIII), Jul 2018, Cairns, Australia
Conference papers hal-02734535v1

Microbial metacommunity: a METABAR coding approach

Marc Buee , Matthieu Barret , Maria Bernard , Didier Debroas , Isabelle Domaizon , et al.
2017 Scientific MEM days: Journées scientifiques MEM (Métaomiques et écosystèmes microbiens), Jan 2017, Paris, France
Conference papers hal-01607836v1
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FROGS: Find, Rapidly, OTUs with Galaxy Solution

Frédéric Escudié , Lucas Auer , Maria Bernard , Mahendra Mariadassou , Laurent Cauquil , et al.
Bioinformatics, 2018, 34 (8), pp.1287-1294. ⟨10.1093/bioinformatics/btx791⟩
Journal articles hal-02626808v1
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FROGS : Find Rapidly OTUs with Galaxy Solution

Frédéric Escudie , Lucas Auer , Maria Bernard , Laurent Cauquil , Katia Vidal , et al.
Colloque d'Écologie Microbienne organisé par l'Association Française d'Écologie Microbienne (AFEM), Nov 2015, Anglet, France. Oxford University Press, 34, 7 p., 2015, Bioinformatics
Conference poster hal-01886389v1

FROGS : Find Rapidly OTU with Galaxy Solution

Frédéric Escudie , Lucas Auer , Maria Bernard , Mahendra Mariadassou , Laurent Cauquil , et al.
2017
Other publications hal-01886442v1
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FROGS: a powerful tool to analyse the diversity of fungi with special management of internal transcribed spacers

Maria Bernard , Olivier Rué , Mahendra Mariadassou , Géraldine Pascal
Briefings in Bioinformatics, 2021, 22 (6), ⟨10.1093/bib/bbab318⟩
Journal articles hal-03323846v1
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Analysis of genomewide patterns of DNA methylation in response to an early temperature stress in rainbow trout

Delphine Lallias , Edwige Quillet , Maria Bernard , Céline Ciobotaru , Nicolas Dechamp , et al.
Aquaculture Europe 2019, Oct 2019, Berlin, Germany
Conference papers hal-02950585v1
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RNA-Seq Data for Reliable SNP Detection and Genotype Calling

Frédéric Jehl , Fabien Degalez , Frédéric Lecerf , Maria Bernard , Laetitia Lagoutte , et al.
Frontiers in Genetics, 2021, 12, pp.655707. ⟨10.3389/fgene.2021.655707⟩
Journal articles hal-03276149v1
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A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses

Ali Hakimzadeh , Alejandro Abdala Asbun , Davide Albanese , Maria Bernard , Dominik Buchner , et al.
Molecular Ecology Resources, 2023, ⟨10.1111/1755-0998.13847⟩
Journal articles hal-04183770v1
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Analysis of genetic variability of DNA methylation in response to an early temperature stress in rainbow trout

Delphine Lallias , Edwige Quillet , Maria Bernard , Nicolas Dechamp , Jean-Michel Le Calvez , et al.
13. International Symposium of Genetics in Aquaculture (ISGA XIII), Jul 2018, Cairns, Australia
Conference papers hal-02737362v1
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FROGSFUNC: Smart integration of PICRUSt2 software into FROGS pipeline

Vincent Darbot , Moussa Samb , Maria Bernard , Olivier Rué , Géraldine Pascal
JOBIM 2022, Jul 2022, Rennes, France.
Conference poster hal-03806133v1

Links between fecal microbiota and the response to vaccination against influenza A virus in pigs

Marion Borey , Fany Blanc , Gaëtan Lemonnier , Jean-Jacques Leplat , Deborah Jardet , et al.
NPJ vaccines, 2021, 6 (1), pp.1-15. ⟨10.1038/s41541-021-00351-2⟩
Journal articles hal-03518946v1
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Des solutions informatiques innovantes pour l’utilisation et le développement de biomarqueurs de diversité du microbiote.

Maria Bernard , Olivier Rué , Malo Le Boulch , Jean Mainguy , Laurent Cauquil , et al.
DefisPHASE 2019, 2019, Rennes, France
Conference poster hal-03851900v1
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Quantitative trait loci for resistance to Flavobacterium psychrophilum in rainbow trout: effect of the mode of infection and evidence of epistatic interactions

Clémence Fraslin , Nicolas Dechamp , Maria Bernard , Francine Krieg , Caroline Hervet , et al.
Genetics Selection Evolution, 2018, 50 (1), pp.60. ⟨10.1186/s12711-018-0431-9⟩
Journal articles hal-02405285v1
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PERFORM PROTOCOL TESTS AND SEQUENCE CHECKS ? THE EXPERIENCE FROM MULTIOMICS MICROBIOTA DATA

Maria Bernard , Jean-Luc Coville , Nicolas Bruneau , Deborah Jardet , Fanny Calenge , et al.
25ème Séminaire des Doctorants du Département de Génétique Animale (SDDGA 2022), Sep 2022, Bordeaux, France.
Conference poster hal-03930031v1
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Particle-attached riverine bacteriome shifts in a pollutant-resistant and pathogenic community during a Mediterranean extreme storm event

Mégane Noyer , Brice Reoyo-Prats , Laurence Voutquenne-Nazabadioko , Maria Bernard , Olivier Verneau , et al.
Science of the Total Environment, 2020, 732, pp.139047. ⟨10.1016/j.scitotenv.2020.139047⟩
Journal articles hal-03162047v1

A richer gut microbiota is related to better feed efficiency and diet adaptability in laying hens

Maria Bernard , Alexandre Lecoeur , Jean-Luc Coville , Nicolas Bruneau , Deborah Jardet , et al.
74. Annual meeting of the european federation of animal science (EAAP), EAAP, Aug 2023, Lyon, France. pp.740
Conference papers hal-04199104v1