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Macro-evolutionary models and coalescent point processes: The shape and probability of reconstructed phylogenies

Amaury Lambert , Tanja Stadler
Preprints, Working Papers, ... hal-00850691v1

Role of the DGAT gene C79T single-nucleotide polymorphism in French obese subjects.

Sylvie Kipfer Coudreau , Patrick Tounian , Geneviève Bonhomme , Philippe Froguel , Jean-Philippe Girardet , et al.
Obesity Research, 2003, 11 (10), pp.1163-7
Journal articles hal-00174573v1

PB-PENTAdb : a web resource for the analysis and prediction of local backbone structure and flexibility using pentapeptide protein blocks

Bernard Offmann , M. Tyagi , A. Joseph , M. Drula , M. Grondin , et al.
9th European Congress on Computation Biology (ECCB10), Sep 2010, Ghent, Belgium
Conference papers hal-01198468v1

Acceleration of clear cell renal cell carcinoma growth in mice following bevacizumab/Avastin treatment: the role of CXCL cytokines.

R. Grepin , M. Guyot , M. Jacquin , J. Durivault , E. Chamorey , et al.
Oncogene, 2012, 31 (13), pp.1683-94. ⟨10.1038/onc.2011.360⟩
Journal articles hal-00824206v1

The reconstructed tree in the lineage-based model of protracted speciation

Amaury Lambert , Hélène Morlon , Rampal S. Etienne
Journal of Mathematical Biology, 2015, 70 (1-2), pp.367-397. ⟨10.1007/s00285-014-0767-x⟩
Journal articles hal-01122781v1

Central nervous system delivery of helper-dependent canine adenovirus corrects neuropathology and behavior in mucopolysaccharidosis type VII mice

L. Ariza , L. Gimenez-Llort , A. Cubizolle , G. Pages , B. Garcia-Lareu , et al.
Human Gene Therapy, 2014, 25 (3), pp.199--211. ⟨10.1089/hum.2013.152⟩
Journal articles hal-02191549v1

A general and flexible method for signal extraction from single-cell RNA-seq data

Davide Risso , Fanny Perraudeau , Svetlana Gribkova , Sandrine Dudoit , Jean-Philippe Vert
Nature Communications, 2018, 9 (1)
Journal articles hal-01985432v1

Maximum likelihood estimator consistency for recurrent random walk in a parametric random environment with finite support

Francis Comets , Mikael Falconnet , Oleg Loukianov , Dasha Loukianova
Stochastic Processes and their Applications, 2016, 126 (11), pp.3578-3604. ⟨10.1016/⟩
Journal articles hal-02631186v1
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On Computer-Intensive Simulation and Estimation Methods for Rare Event Analysis in Epidemic Models

Stéphan Clémençon , Anthony Cousien , Miraine Dávila Felipe , Viet Chi Tran
Statistics in Medicine, 2015, 34 (28), pp.3696-3713. ⟨10.1002/sim.6596⟩
Journal articles hal-00854458v1

From individual-based epidemic models to McKendrick-von Foerster PDEs: a guide to modeling and inferring COVID-19 dynamics

Félix Foutel-Rodier , François Blanquart , Philibert Courau , Peter Czuppon , Jean-Jil Duchamps , et al.
Journal of Mathematical Biology, 2022, 85 (4), pp.43. ⟨10.1007/s00285-022-01794-4⟩
Journal articles hal-03796030v1

Phylogenetic analysis accounting for age-dependent death and sampling with applications to epidemics

A. Lambert , H.K. Alexander , T. Stadler
Journal of Theoretical Biology, 2014, 352, pp.60-70. ⟨10.1016/j.jtbi.2014.02.031⟩
Journal articles hal-01017355v1
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Fungal microbiota dysbiosis in IBD.

Harry Sokol , Valentin Leducq , Hugues Aschard , Hang-Phuong Pham , Sarah Jegou , et al.
Gut, 2016, 66 (6), pp.1039-1048. ⟨10.1136/gutjnl-2015-310746⟩
Journal articles hal-01270909v1

Application of Belief Propagation to Genome-Wide Association Studies

Vittorio Perduca , Grégory Nuel
8ème Journées Francophones sur les Réseaux Bayésiens et les Modèles Graphiques Probabilistes (JFRB 2016), Jun 2016, Clermont Ferrand, France
Conference papers hal-01343106v1

Breakpoint Model for Logistic Regression and Application to the detection of G x E Interactions

Grégory Nuel , Flora Alarcon
International Biometric Conference, Jul 2016, Victoria, Canada
Conference papers hal-01427253v1

Predicting the loss of phylogenetic diversity under non-stationary diversification models

Amaury Lambert , Mike Steel
Preprints, Working Papers, ... hal-00833585v1

Predicting the loss of phylogenetic diversity under non-stationary diversification models

A. Lambert , M. Steel
Journal of Theoretical Biology, 2013, 337, pp.111-124. ⟨10.1016/j.jtbi.2013.08.009⟩
Journal articles hal-00936059v1
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The Mean First Rotation Time of a planar polymer

Stavros Vakeroudis , Marc Yor , David Holcman
Preprints, Working Papers, ... hal-00553669v2

A simple, semi-deterministic approximation to the distribution of selective sweeps in large populations

G. Martin , A. Lambert
Theoretical Population Biology, 2015, 101, pp.40-46
Journal articles hal-01176239v1
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Asymptotic Results on Adaptive False Discovery Rate Controlling Procedures Based on Kernel Estimators

Pierre Neuvial
Journal of Machine Learning Research, 2013, 14, pp.1423-1459
Journal articles hal-00460677v2

Nonlinear projection methods for visualizing Barcode data and application on two data sets

O. Olteanu , V. Nicolas , B. Schaeffer , C. Denys , A.D. Missoup , et al.
Molecular Ecology Resources, 2013, 13 (6), pp.976-990
Journal articles hal-00937304v1
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The Mean First Rotation Time of a planar polymer

Stavros Vakeroudis , Marc Yor , David Holcman
Preprints, Working Papers, ... hal-00553669v3

Probabilistic Models for the (sub)Tree(s) of Life

Amaury Lambert
Preprints, Working Papers, ... hal-01288230v1
Image document

Semi-Parametric Estimation of Survival in Age-Dependent Genetic Disease. Application to the Transthyretin-related Hereditary Amyloidosis

Flora Alarcon , Gregory Nuel , Violaine Planté-Bordeneuve
Preprints, Working Papers, ... hal-01343862v2

Refine penetrance estimates in the main pathogenic variants of transthyretin hereditary (familial) amyloid polyneuropathy (TTR-FAP) using a new non-parametric approach (NPSE)

Farida Gorram , Flora Alarcon , Hervé Perdry , Bérénice Hébrard , Thibaud Damy , et al.
The XV InternationalSymposium on Amyloidosis, Jul 2016, Uppsala, Sweden
Conference papers hal-01474924v1

Micropore-induced capillarity enhances bone distribution in vivo in biphasic calcium phosphate scaffolds

L. E. Rustom , T. Boudou , S. Y. Lou , I. Pignot-Paintrand , B. W. Nemke , et al.
Acta Biomaterialia, 2016, 44, pp.144-154. ⟨10.1016/j.actbio.2016.08.025⟩
Journal articles hal-01465592v1
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Adaptive radiation driven by the interplay of eco-evolutionary and landscape dynamics

R. Aguilée , D. Claessen , A. Lambert
Evolution - International Journal of Organic Evolution, 2013, 67 (5), pp.1291-1306. ⟨10.1111/evo.12008⟩
Journal articles istex hal-00838275v1

A (New) Versatile Statistic for Genome-Wide Association Studies

Vittorio Perduca , Grégory Nuel
International Biometric Conference, Jul 2016, Victoria, Canada
Conference poster hal-01346341v1

Error Rates of Phylogenetic and supervised Classification Algorithms in DNA Barcoding.

Catherine Larédo , Nicolas Vergne , Frederic Austerlitz , Olivier David , Brigitte Schaeffer , et al.
Third International Barcode of Life Conference, 2009, Mexico, Mexico
Conference papers hal-02338011v1

B-Raf protein isoforms interact with and phosphorylate Mek-1 on serine residues 218 and 222.

Catherine Papin , Alain Eychène , A Brunet , G. Pagès , J. Pouyssegur , et al.
Oncogene, 1995, 10 (8), pp.1647-51
Journal articles hal-02525367v1

Sample genealogy and mutational patterns for critical branching populations

Guillaume Achaz , C. Delaporte , A. Lambert
Preprints, Working Papers, ... hal-01053343v1