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A Molecular Portrait of De Novo Genes in Yeasts

Nikolaos Vakirlis , Alex Hebert , Dana Opulente , Guillaume Achaz , Chris Todd Hittinger , et al.
Molecular Biology and Evolution, 2018, 35 (3), pp.631-645. ⟨10.1093/molbev/msx315⟩
Journal articles hal-02164404v1
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Contrasting evolutionary genome dynamics between domesticated and wild yeasts

Jia-Xing Yue , Jing Li , Louise Aigrain , Johan Hallin , Karl Persson , et al.
Nature Genetics, 2017, 49 (6), pp.913-924. ⟨10.1038/ng.3847⟩
Journal articles hal-01546021v1

Dissection of quantitative traits by bulk segregant mapping in a protoploid yeast species.

Anastasie Sigwalt , Claudia Caradec , Christian Brion , Jing Hou , Jacky de Montigny , et al.
FEMS Yeast Research, 2016, 16 (5), ⟨10.1093/femsyr/fow056⟩
Journal articles hal-01588206v1

The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium inaugural meeting report

Ariel Chernomoretz , Gustavo Stolovitzky , Pawel P. Labaj , Alexandra B. Graf , Aaron Darling , et al.
Microbiome, 2016, 4, pp.24. ⟨10.1186/s40168-016-0168-z⟩
Journal articles hal-01528508v1
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Reconstruction of ancestral chromosome architecture and gene repertoire reveals principles of genome evolution in a model yeast genus

Nikolaos Vakirlis , Véronique Sarilar , Guénola Drillon , Aubin Fleiss , Nicolas Agier , et al.
Genome Research, 2016, 26 (7), pp.918-932. ⟨10.1101/gr.204420.116⟩
Journal articles hal-01331620v1

A Versatile Procedure to Generate Genome-Wide Spatiotemporal Program of Replication in Yeast Species

Nicolas N. Agier , Gilles Fischer
Methods in Molecular Biology, 2016, Yeast Functional Genomics - Methods and Protocols, 978-1-4939-3078-4
Book sections hal-01588228v1

A Versatile Procedure to Generate Genome-Wide Spatiotemporal Program of Replication in Yeast Species

Nicolas N. Agier , Gilles Fischer
2016, Yeast Functional Genomics, 978-1-4939-3078-4. ⟨10.1007/978-1-4939-3079-1_14⟩
Books hal-01591570v1
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bz-rates: a web-tool to estimate mutation rates from fluctuation analysis

Alexandre Gillet-Markowska , Guillaume Louvel , Gilles Fischer
G3, 2015, 5 (11), pp.2323-2327. ⟨10.1534/g3.115.019836⟩
Journal articles hal-01264305v1
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Quantitative study of structural variations of chromosomes in saccharomyces cerevisiae

Alexandre Gillet-Markowska
Genetics. Université Pierre et Marie Curie - Paris VI, 2015. English. ⟨NNT : 2015PA066233⟩
Theses tel-01261378v1

Ulysses: accurate detection of low-frequency structural variations in large insert-size sequencing libraries

Alexandre Gillet-Markowska , Hugues Richard , Gilles Fischer , Ingrid Lafontaine
Bioinformatics, 2015, 31 (6), pp.801-808. ⟨10.1093/bioinformatics/btu730⟩
Journal articles hal-01528522v1
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Population genomics reveals chromosome-scale heterogeneous evolution in a protoploid yeast

Anne Friedrich , Paul Jung , Cyrielle Reisser , Gilles Fischer , Joseph Schacherer
Molecular Biology and Evolution, 2014, 32 (1), pp.184-192. ⟨10.1093/molbev/msu295⟩
Journal articles hal-01087685v1
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Filling annotation gaps in yeast genomes using genome-wide contact maps.

Hervé Marie-Nelly , Martial Marbouty , Axel Cournac , Gianni Liti , Gilles Fischer , et al.
Bioinformatics, 2014, 30 (15), pp.2105-13. ⟨10.1093/bioinformatics/btu162⟩
Journal articles pasteur-01488132v1

Total synthesis of a functional designer eukaryotic chromosome.

Narayana Annaluru , Héloïse Muller , Leslie A. Mitchell , Sivaprakash Ramalingam , Giovanni Stracquadanio , et al.
Science, 2014, 344 (6179), pp.55-8. ⟨10.1126/science.1249252⟩
Journal articles pasteur-01420002v1
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SynChro: A Fast and Easy Tool to Reconstruct and Visualize Synteny Blocks along Eukaryotic Chromosomes

Guénola Drillon , Alessandra Carbone , Gilles Fischer
PLoS ONE, 2014, 9 (3), pp.e92621. ⟨10.1371/journal.pone.0092621⟩
Journal articles hal-01358096v1

A set of genetically diverged Saccharomyces cerevisiae strains with markerless deletions of multiple auxotrophic genes

Helene Louvel , Alexandre Gillet-Markowska , Gianni Liti , Gilles Fischer
Yeast, 2014, 31 (3), pp.91-101. ⟨10.1002/yea.2991⟩
Journal articles hal-01528407v1
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An integrated “omics” approach to the characterization of maize (Zea mays L.) mutants deficient in the expression of two genes encoding cytosolic glutamine synthetase

Nardjis Amiour , Sandrine Imbaud , Gilles Clément , Nicolas Agier , Michel Zivy , et al.
BMC Genomics, 2014, 15 (1), pp.1005. ⟨10.1186/1471-2164-15-1005⟩
Journal articles hal-01096990v1

Combinatorics of chromosomal rearrangements based on synteny blocks and synteny packs

Guénola Drillon , Alessandra Carbone , Gilles Fischer
Journal of Logic and Computation, 2013, 23 (4, SI), pp.815-838. ⟨10.1093/logcom/exr047⟩
Journal articles hal-01528430v1

The Spatiotemporal Program of Replication in the Genome of Lachancea kluyveri

Nicolas Agier , Orso Maria Romano , Fabrice Touzain , Marco Cosentino Lagomarsino , Gilles Fischer
Genome Biology and Evolution, 2013, 5 (2), pp.370-388. ⟨10.1093/gbe/evt014⟩
Journal articles hal-01528417v1

The Mutational Profile of the Yeast Genome Is Shaped by Replication

Nicolas Agier , Gilles Fischer
Molecular Biology and Evolution, 2012, 29 (3), pp.905-913. ⟨10.1093/molbev/msr280⟩
Journal articles hal-01528431v1
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Chromosomal arm replacement generates a high level of intraspecific polymorphism in the terminal inverted repeats of the linear chromosomal DNA of Streptomyces ambofaciens

Gilles Fischer , Thomas Wenner , Bernard Decaris , Pierre Leblond
Proceedings of the National Academy of Sciences of the United States of America, 1998, 7 (6), pp.14296-301. ⟨10.1073/pnas.95.24.14296⟩
Journal articles hal-01625341v1