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Approximation Hardness of the Cross-Species Conserved Active Modules Detection Problem

Thomas Hume , Hayssam Soueidan , Macha Nikolski , Guillaume Blin
41st International Conference on Current Trends in Theory and Practice of Computer Science (SOFSEM'15), Jan 2015, Pec pod Sněžkou, Czech Republic. pp. 242-253
Conference papers hal-01056406v1

ProteomeBinders: planning a European resource of affinity reagents for analysis of the human proteome

Michael J. Taussing , Oda Stoevesandt , Carl a K Borrebaeck , Andrew R Bradbury , Dolores Cahill , et al.
Nature Methods, 2007, 4, pp.13-17. ⟨10.1038/nmeth0107-13⟩
Journal articles hal-00306585v1

An introduction to metabolic networks and their structural analysis.

Vincent Lacroix , Ludovic Cottret , Patricia Thebault , Marie-France Sagot
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2008, 5 (4), pp.594-617. ⟨10.1109/TCBB.2008.79⟩
Journal articles hal-00355497v1

Microbiomes and Holobionts

Derek Skillings , Katarzyna B Hooks
Reference Module in Earth Systems and Environmental Sciences, 2018
Book sections hal-01893113v1
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DypFISH: Dynamic Patterned FISH to Interrogate RNA and Protein Spatial and Temporal Subcellular Distribution

Anca Savulescu , Robyn Brackin , Emmanuel Bouilhol , Benjamin Dartigues , Jonathan H Warrell , et al.
2019
Preprints, Working Papers, ... hal-02409081v1

Further Steps in TANGO: improved taxonomic assignment in metagenomics

Macha Nikolski , Daniel Alonso-Alemany , Aurélien Barré , Stefano Beretta , Paola Bonizzoni , et al.
Bioinformatics, 2013, pp.10.1093/bioinformatics/btt256. ⟨10.1093/bioinformatics/btt256⟩
Journal articles hal-00848263v1

MolliGen 3.0, evolution of a database dedicated to the comparative genomics of mollicutes

Aurélien Barré , Claire Lemaitre , Patricia Thebault , Antoine de Daruvar , Alain Blanchard , et al.
Congress of the International Organization for Mycoplasmology ; 2010/07/11-16 ; Chianciano Terme (ITA). IOM congress 2010., 2010, Italy
Conference papers hal-00649151v1

Argininosuccinate synthase 1 (ASS1): A marker of unclassified hepatocellular adenoma and high bleeding risk

E Henriet , Aa Hammoud , Jw Dupuy , B Dartigues , Z Ezzoukry , et al.
Hepatology, 2017, ⟨10.1002/hep.29336⟩
Journal articles hal-01550711v1
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YOC, A new strategy for pairwise alignment of collinear genomes

Raluca Uricaru , Célia Michotey , Hélène Chiapello , Eric Rivals
BMC Bioinformatics, 2015, 16 (1), pp.16:111. ⟨10.1186/s12859-015-0530-3⟩
Journal articles lirmm-01170968v1

CBIB/MaBioVis : noeud Bordelais de GRISBI

Tiphaine Martin
BIOinformatique à GRAnde échelLE - BIOGRALE 2008, Christophe CARON and Olivier COLLIN and Antoine de DARUVAR and Gael EVEN and Hugues LEROY and Tiphaine MARTIN and Claudine MEDIGUE and Frédéric PLEWNIAK and Bruno SPATARO and Christophe BLANCHET, Nov 2008, Lyon, France
Conference papers inria-00614465v1
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A community effort to create standards for evaluating tumor subclonal reconstruction

Adriana Salcedo , Maxime Tarabichi , Shadrielle Melijah G. Espiritu , Amit Deshwar , Matei David , et al.
Nature Biotechnology, 2020, 38 (1), pp.97-107. ⟨10.1038/s41587-019-0364-z⟩
Journal articles hal-02438695v1

Insights into genome plasticity of the wine-making bacterium Oenococcus oeni strain ATCC BAA-1163 by decryption of its whole genome.

Elisabeth Bon , Cosette Granvalet , Fabienne Remize , Diliana Dimova , Patrick Lucas , et al.
9th Symposium on Lactic Acid Bacteria, Sep 2008, Egmond aan Zee, Netherlands. pp.A047
Conference papers inria-00340073v1
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Towards an open grapevine information system

Anne-Françoise Adam-Blondon , Michael Alaux , Cyril Pommier , D Cantu , Z-M Cheng , et al.
Horticulture research, 2016, 3, pp.16056. ⟨10.1038/hortres.2016.56⟩
Journal articles hal-01404714v1

Molecular typing of wine yeast strains Saccharomyces uvarum using microsatellite markers

Isabelle Masneuf-Pomarède , C. Lejeune , Pascal Durrens , M. Lollier , Michel Aigle , et al.
Systematic and Applied Microbiology, 2007, 30, pp.75-82. ⟨10.1016/j.syapm.2006.02.006⟩
Journal articles istex hal-00306666v1

Erratum to: COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

Reza Salek , Steffen Neumann , Daniel Schober , Jan Hummel , Kenny Billiau , et al.
Metabolomics, 2015, 11 (6), pp.1598-1599. ⟨10.1007/s11306-015-0822-7⟩
Journal articles hal-02630736v1

Baseline co-medications may alter the anti-tumoural effect of checkpoint inhibitors as well as the risk of immune-related adverse events

Marie Kostine , Eleonora Mauric , Alice Tison , Thomas Barnetche , Aurélien Barre , et al.
European Journal of Cancer, 2021, 157, pp.474-484. ⟨10.1016/j.ejca.2021.08.036⟩
Journal articles hal-03671495v1
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Bioinformatics methods for analyzing anti-hormonal treatment resistance in breast cancer

Justine Rudewicz , Hayssam Soueidan , Audrey Gros , Gaetan Macgrogan , Hervé Bonnefoi , et al.
BCBB 2014 (Bordeaux Computational Biology and Bioinformatics), Nov 2014, Bordeaux, France
Conference poster hal-01120049v1
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A novel substitution matrix fitted to the compositional bias in Mollicutes improves the prediction of homologous relationships

Claire Lemaitre , Aurélien Barré , Christine Citti , Florence Tardy , François Thiaucourt , et al.
BMC Bioinformatics, 2011, 12 (1), pp.457. ⟨10.1186/1471-2105-12-457⟩
Journal articles hal-00784414v1
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VirHunter: A Deep Learning-Based Method for Detection of Novel RNA Viruses in Plant Sequencing Data

Grigorii Sukhorukov , Maryam Khalili , Olivier Gascuel , Thierry Candresse , Armelle Marais , et al.
Frontiers in Bioinformatics, 2022, 2, pp.867111. ⟨10.3389/fbinf.2022.867111⟩
Journal articles hal-03671482v1

OENOCOCCUS OENI (alias Leuconostoc oenos) UNE BACTERIE LACTIQUE DU VIN. QUE NOUS APPORTE LE SEQUENCAGE DE SON GENOME?

Elisabeth Bon , Patrick Lucas , Antoine de Daruvar , Aline Lonvaud-Funel
Rencontres Annuelles de l'ISVV, Institut des Sciences de la Vigne et du Vin (ISVV). Villenave d'Ornon, FRA., Jun 2008, Bordeaux, France
Conference papers inria-00407904v1

The proteome of maritime pine wood forming tissue

Jean-Marc Gion , Céline Lalanne , Grégoire Le Provost , Hélène Ferry-Dumazet , Jorge Paiva , et al.
Proteomics, 2005, 5, pp.3731-3751
Journal articles hal-00306580v1

Genetic markers for characterisation of the adaptability of oenococcus to wine

Arnaud Delaherche , Emmanuel Gindreau , Elisabeth Bon , Aline Lonvaud-Funel
8th International Symposium on Lactic Acid Bacteria (LAB8), Aug 2005, Egmond aan Zee, Netherlands
Conference papers inria-00395779v1

Présentation des Centres Bioinformatiques Régionaux : RENABI-GO

Tiphaine Martin , Christophe C. Caron , Olivier Collin
Journées GRISBI 2011 : scientifiques et technologique, Christophe Blanchet and Christophe Caron and Olivier Collin and Stéphane Delmotte and Clément Gauthey and Tiphaine Martin and Franck Samson and Bruno Spataro, May 2011, Lyon, France
Conference papers inria-00614475v1

MICADo - Looking for mutations in targeted PacBio cancer data: an alignment-free method

Justine Rudewicz , Hayssam Soueidan , Raluca Uricaru , Hervé Bonnefoi , Richard Iggo , et al.
Frontiers in Genetics, 2016, ⟨10.3389/fgene.2016.00214⟩
Journal articles hal-01409750v1

Aptamer selection by direct microfluidic recovery and surface plasmon resonance evaluation

Eric Dausse , Aurélien Barré , Aimé Ahissan , Alexis Groppi , Alain Rico , et al.
Biosensors and Bioelectronics, 2016
Journal articles hal-01269677v1

ELIXIR Beacon

Serena Scollen , Jordi Rambla , Mikael Linden , Sabela de La Torre , Alfred Gil , et al.
Journal articles hal-01528108v1

A study of chemical systems using signal flow graph theory

M. Dobrijevic , J. P. Parisot , I. Dutour
Advances in Space Research, 1995, 16, pp.105-108. ⟨10.1016/0273-1177(95)00198-N⟩
Journal articles istex hal-00375724v1

An integrative genomics approach for deciphering the complex interactions between ascorbate metabolism and fruit growth and composition in tomato.

Virginie Garcia , Rebecca Stevens , Laurent Gil , Louise Gilbert , Noé Gest , et al.
Comptes Rendus Biologies, 2009, 332 (11), pp.1007-21. ⟨10.1016/j.crvi.2009.09.013⟩
Journal articles istex hal-00645936v1
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Systrip: a visual environment for the investigation of time-series data in the context of metabolic networks

Jonathan Dubois , Ludovic Cottret , Amine Ghozlane , David Auber , Frédéric Bringaud , et al.
16th International Conference on Information Visualization (IV'12), Jul 2012, Montpellier, France. pp.4771a204
Conference papers hal-00742176v1

iRNA: Integrative pipeline for genome-wide detection of sRNA targets

Amine Ghozlane , Jonathan Dubois , Isabelle Dutour , Romain Bourqui , Marc Breton , et al.
"Autour des ARNs non codant" - Rencontre bioinformatique 2012, Feb 2012, Toulouse, France
Conference papers hal-00695794v1